Libros Redes

• Easley D, Kleinberg J, Networks, Crowds and Markets [pdf]
• Newman M, Networks. An Introduction [pdf]
• Barabasi L, Networks [link ]

Sistemas Complejos

• Anderson, More is different, Science 1972 [pdf]
• Hartwell,Nature 1999, From molecular to modular cell biology,[pdf]
• Albert, Scale free networks in cell biology [pdf]
• Barabasi, Nature Genetics 2004, Network biology: understanding the cell’s functional organization [pdf]

Redes Sociales

• Milgram, Psychology Todaey 1967,The small world problem [pdf]
• Travers, Sociometry 1969, An experimental study of the small world problem [pdf]
• Granovetter,Am. Journal of Sociology 1973,The strength of weak ties [pdf]
• Dunbar, Evolutionary Anthropology 1998, The social brain hypothesis [pdf]
• Burt, ROB 2000, The network structure of social capital [pdf]
• Moody, AJS 2001,” Race, school integration and friendship segregation in America” [pdf]
• Watts, Science 2002, Identity and search in social networks [pdf]
• Adamic, ACM 2004, The political blogosphere and the 2004 U.S. election. [pdf]
• Bearman, AJPH 2004, Suicide and friendships among american adolescents [pdf]
• Christakis, New Engalnd Journal of Medicine 2004, The spread of obesity in a large social network over 32 years [pdf]
• Watts, Journal Consumer Research 2007, Influential, networks, and public opinion formation [pdf]
• Onnela, PNAS 2007, Structure and tie strengths in mobile communication networks [pdf]
• Fowler, BMJ 2008, Dynamic spread of happiness in a large social network [pdf]
• Leskovec, WWW 2008, Planetary-scale views on a large instant messaging network [pdf]
• Crandall, KDD 2008, Feedback effects between similarity and social influence in online communities. [pdf]
• Bliss, Journal Comp Science 2012, Twitter reciprocal reply networks exhibit assortativity with respect to happiness [pdf]
• Brea, SNAKDD 2014, Harnessing mobile phone social network topology to infer users demographics attributes [pdf]

Propiedades de redes

• Freeman, Social Networks 1978, Centrality in social networks, a conceptual clarification [pdf]
• Watts, Nature 1998, Collective dynamics of small-world networks [pdf]
• Barabasi, Science 1999, Emergence of scaling in random networks. [pdf]
• Callaway,Cond-mat 2000,Network robustness and fragility: percolation on random graphs [pdf]
• Chung, PNAS 2001, The average distance in random graphs with given expected degrees. [pdf]
• Newman,PNAS 2002,Random graph models of social networks [pdf]
• Cohen, PRL 2003, Scale-free networks are ultrasmall [pdf]
• Keller, BioEssays 2005,” Revisiting “”scale-free”" networks” [pdf]
• Borgatti, Social Networks 2006, A graph theoretic perspective on centrality [pdf]
• Stumpf, PNAS 2005, subnets of scale-free networks are not scale-free: sampling properties of networks [pdf]

Centralidad/Letalidad

• Jeong, Nature 2001, Lethality and centrality in protein networks. [pdf]
• He, PLoS Genetics 2006, Why hubs tend to be essential in protein networks [pdf]
• Zotenko, PLoS Comp. Bio. 2008, Why do hubs in the yeast PIN tend to be essential. [pdf]

Estructura de redes biologicas

• Milo,Science 2002,Netowrk motifs: simple building blocks of complex networks [pdf]
• Milo,Cond-mat 2004,On the uniform generation of random graphs with prescribed degree sequences [pdf]
• Sole,SFI-wp 2001,A model of large-scale proteome evolution [pdf]
• Vazquez,ComPlexUs 2003,Modeling of protein interacion networks [pdf]
• Jeong, Nature 2000, Large scale organization of metabolic networks [pdf]
• Ravasz,Science 2002,Hierarchical Organization of Modularity in Metabiolic Networks [pdf]
• Berg, BMC Evolutionary Biology 2004, Structure and evolution of PINs [pdf]
• Przulj, 2004, Modeling interactome: scale-free or geometric? [pdf]
• Han, Nature Biotech 2005, Effect of sampling on topology predictions of PINs [pdf]
• Stumpf, PNAS 2005, Subnets of scale-free networks are not scale free: sampling properties of networks [pdf]
• Sharan, Nature Biotechnology 2006, Modelling cellular machinery through biological network comparison [pdf]
• Alon, Nature 2007, Motifs: theory and experimental approaches [pdf]
• Gursoy, BST 2008, Topological properties of PIN from a structural perspective [pdf]
• Jancic, Scientific Report 2014, Modelling the yeast interactome [pdf]

Comunidades

• Fortunato, Physics Reports 2009, Community detection in graphs [pdf]
• Newman,PRE 2004,Fast algorithm for detecting community structure in networks [pdf]
• Good,PRE 2010,Performance of modularity maximization in practical contexts [pdf]
• Yang,ACM 2012,Structure and overlaps of communities in networks [pdf]
• Yang,IEEE 2014,Overlapping communities explain core-periphery organization of networks. [pdf]
• Palla,preprint,Uncovering the overlapping community structure of complex networks in nature and society [pdf]
• Bergstrom, PNAS 2008, Infomap [pdf]
• Rosvall. European Physical Journal 2009, The map equation [pdf]
• Blondel 2008, Louvain algorithm [pdf]
• Traag, Scientific Reports 2018, Leiden algorithm [pdf]
• Traag, Phys Rev E 2011, Resolution-free community detection [pdf]

Biologia de sistemas integrativa

• Maslov, Science 2002, Specificity and stability of PPI [pdf]
• Ge, Trends in Genetics 2003, Integrating omic information [pdf]
• Yook, Proteomics 2004, Functional and topological characterization of protein interaction netwroks [pdf]
• Nabieva, Bioinformatics 2005, Whole proteome prediction of protein function via graph theoretic analysis of interaction maps [pdf]
• Jonsson, Bioinformatics 2006, Global topological features of cancer proteins in the human interactome [pdf]
• Platzer, BMC Bioinfo 2007, Characterization of protein interaction networks in tumors [pdf]
• Kohler,AJHG 2008,Walking the interactome for prioritization of candidate disease genes [pdf]
• Han, Nature 2014, Evidence for dynamically organized modularity in yeast PPI [pdf]
• Yu, PLoS Comp Bio 2007, Bottlenecks in PINs: correlation with gene essentiality and expression dynamics [pdf]
• Pesquita,PloS Comp Bio 2009,Semantic similarity in biomedical ontologies [pdf]
• Cerami, PLoS One 2010, Automated network analysis identifies core pathway in glioblastoma [pdf]
• Costanzo, Science 2010, The genetic landscape of a cell [pdf]
• Mitra,Nature Reviews 2013,Integrative approaches for finding modular structure in biological networks [pdf]
• Mitra,Nature Reviews 2013,Integrative approaches for finding modular structure in biological networks – Sup Mat [pdf]
• Wuchty, PNAS 2013, Controllability in PINs [pdf]
• Creixell, Nature Methods 2015, Pathway network analysis of cancer genomes [pdf]
• Menche, Science 2015, Uncovering disease-disease relationships through the incomplete interactome [pdf]
• Turinsky, Nature Biotech 2011, Interaction databases on the same page [pdf]
• Bengio, Delalleau, Le Roux, Label propagation and quadratic criterion [pdf]